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DeLano Scientific LLC PyMOL macpymol
Macpymol, supplied by DeLano Scientific LLC PyMOL, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macpymol/macpymol/pm39481007-446-5-5
Average 90 stars, based on 1 article reviews
macpymol - by Bioz Stars, 2026-09
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Related Articles

other:

Article Title: Functional analysis of novel splicing and missense mutations identified in the ASS1 gene in classical citrullinemia patients.
Article Snippet: 22 Article history: 23 24 25 26 27 28 29 30 31 32 T E D P Received 3 May 2014 Received in revised form 16 August 2014 Accepted 23 August 2014 Available online xxxx

Generated:


Article Title: Functional Analyses of the Three Simian Hemorrhagic Fever Virus Nonstructural Protein 1 Papain-Like Proteases
Article Snippet: .. Homology models were generated using MODELLER ( 25 ) ( http://salilab.org/modeller/ ) as implemented in the Max Planck Institute's Bioinformatics Toolkit ( http://toolkit.tuebingen.mpg.de/ ), and the structures were rendered and compared using MacPymol (Delano Scientific, LLC; http://www.pymol.org ). ..


Selection:

Article Title: The Evolution of the Mammalian ABCA6 -like Genes: Analysis of Phylogenetic, Expression, and Population Genetic Data Reveals Complex Evolutionary Histories
Article Snippet: .. Amino acid sites identified as under positive selection in the ungapped alignments were matched to positionally homologous sites in the cryo-EM structure of human ABCA1 (PDB ID: 5XJY) via a multiple sequence alignment using MUSCLE ( ) and subsequently visualized in MacPyMOL (2009, DeLano Scientific LLC). ..

Sequencing:

Article Title: The Evolution of the Mammalian ABCA6 -like Genes: Analysis of Phylogenetic, Expression, and Population Genetic Data Reveals Complex Evolutionary Histories
Article Snippet: .. Amino acid sites identified as under positive selection in the ungapped alignments were matched to positionally homologous sites in the cryo-EM structure of human ABCA1 (PDB ID: 5XJY) via a multiple sequence alignment using MUSCLE ( ) and subsequently visualized in MacPyMOL (2009, DeLano Scientific LLC). ..

Mutagenesis:

Article Title: Three novel mutations of ARG1 identified in Chinese patients with argininemia detected by newborn screening.
Article Snippet: Three novel mutations of ARG1 identified in Chinese patients with argininemia detected by newborn screening



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Type IB DNA topoisomerase. a) Human TOP1B (TOPO70) crystal structure with DNA and topotecan (TPT). Surface representation of the N-terminally truncated TOPO70 (lacking the first 174 residues) in orange with DNA (sticks) and TPT (blue balls), PDB# 1K4T [100]. All structure figures were generated using MacPyMol 0.99rc6 (DeLano Scientific, San Carlos, CA). b) Schematic representation of eukaryotic DNA topoisomerase I (TOP1B) catalytic cycle where the covalent enzyme-DNA intermediate constitutes the sole cellular target of camptothecin (CPT). Topotecan and irinotecan as FDA approved CPT analogs. TOP1B non-covalently circumscribes duplex DNA. The active side tyrosine cleaves one strand forming a 3’phospho-tyrosyl bond, which covalently links the enzyme to the 3’end of DNA. After DNA relaxation by a controlled rotation mechanism, the DNA ends religate and TOP1B may dissociate from the DNA. CPT intercalates into the cleavage site preventing religation of the DNA ends. The reversible drug-stabilized enzyme-DNA complex can be converted into lethal DNA lesions in collisions with processive replication or transcription machinery. See text for more details

Journal: Cancer chemotherapy and pharmacology

Article Title: DNA Topoisomerase Targeting Chemotherapeutics: What’s New?

doi: 10.1007/s00280-017-3334-5

Figure Lengend Snippet: Type IB DNA topoisomerase. a) Human TOP1B (TOPO70) crystal structure with DNA and topotecan (TPT). Surface representation of the N-terminally truncated TOPO70 (lacking the first 174 residues) in orange with DNA (sticks) and TPT (blue balls), PDB# 1K4T [100]. All structure figures were generated using MacPyMol 0.99rc6 (DeLano Scientific, San Carlos, CA). b) Schematic representation of eukaryotic DNA topoisomerase I (TOP1B) catalytic cycle where the covalent enzyme-DNA intermediate constitutes the sole cellular target of camptothecin (CPT). Topotecan and irinotecan as FDA approved CPT analogs. TOP1B non-covalently circumscribes duplex DNA. The active side tyrosine cleaves one strand forming a 3’phospho-tyrosyl bond, which covalently links the enzyme to the 3’end of DNA. After DNA relaxation by a controlled rotation mechanism, the DNA ends religate and TOP1B may dissociate from the DNA. CPT intercalates into the cleavage site preventing religation of the DNA ends. The reversible drug-stabilized enzyme-DNA complex can be converted into lethal DNA lesions in collisions with processive replication or transcription machinery. See text for more details

Article Snippet: All structure figures were generated using MacPyMol 0.99rc6 (DeLano Scientific, San Carlos, CA). b) Schematic representation of eukaryotic DNA topoisomerase I (TOP1B) catalytic cycle where the covalent enzyme-DNA intermediate constitutes the sole cellular target of camptothecin (CPT).

Techniques: Generated